Publications by Year: 2022

2022
Lambropoulos K, Alvertis AM, Morphis A, Simserides C. Cyclo[18]carbon including zero-point motion: ground state{,} first singlet and triplet excitations{,} and hole transfer. Phys. Chem. Chem. Phys. [Internet]. 2022;24:7779-7787. WebsiteAbstract
Recent synthesis of cyclo[18]carbon has spurred increasing interest in carbon rings. We focus on a comparative inspection of ground and excited states{,} as well as of hole transfer properties of cumulenic and polyynic cyclo[18]carbon via Density Functional Theory (DFT){,} time-dependent DFT (TD-DFT) and real-time time-dependent DFT (RT-TDDFT). Zero-point vibrations are also accounted for{,} using a Monte Carlo sampling technique and a less exact{,} yet mode-resolved{,} quadratic approximation. The inclusion of zero-point vibrations leads to a red-shift on the HOMO–LUMO gap and the first singlet and triplet excitation energies of both conformations{,} correcting the values of the ‘static’ configurations by 9% to 24%. Next{,} we oxidize the molecule{,} creating a hole at one carbon atom. Hole transfer along polyynic cyclo[18]carbon is decreased in magnitude compared to its cumulenic counterpart and lacks the symmetric features the latter displays. Contributions by each mode to energy changes and hole transfer between diametrically opposed atoms vary{,} with specific bond-stretching modes being dominant.
Sefidkar N, Fathizadeh S, Nemati F, Simserides C. Energy Transport along α-Helix Protein Chains: External Drives and Multifractal Analysis. Materials [Internet]. 2022;15. WebsiteAbstract
Energy transport within biological systems is critical for biological functions in living cells and for technological applications in molecular motors. Biological systems have very complex dynamics supporting a large number of biochemical and biophysical processes. In the current work, we study the energy transport along protein chains. We examine the influence of different factors such as temperature, salt concentration, and external mechanical drive on the energy flux through protein chains. We obtain that energy fluctuations around the average value for short chains are greater than for longer chains. In addition, the external mechanical load is the most effective agent on bioenergy transport along the studied protein systems. Our results can help design a functional nano-scaled molecular motor based on energy transport along protein chains.